Package index • ArchaeoPhases

Data input/output

as_coda(): Coerce to Coda

as_events(): Coerce to Events

as_phases(): Coerce to Phases

is_original(): Check for an Original MCMC File

read_bcal(): Read BCal Output

read_chronomodel_events() read_chronomodel_phases(): Read ChronoModel Output

read_oxcal(): Read OxCal Output

Rhythms

activity() plot(<ActivityEvents>,<missing>): Activity Plot

elapse(): Elapsed Time Scale

occurrence(): Occurrence Plot

tempo() plot(<CumulativeEvents>,<missing>): Tempo Plot

Phases

duration(): Phase Duration

phases(): Compute Phases

Time Ranges

boundaries(): Phase Time Range

hiatus(): Hiatus Between Two Dates

transition(): Transition Range Between Successive Phases

Age-Depth Modeling

bury() predict(<AgeDepthModel>) plot(<AgeDepthModel>,<missing>): Age-Depth Modeling

interpolate(): Interpolate Between Two Dates

Visualization

plot(<MCMC>,<missing>): Plot Events

plot(<PhasesMCMC>,<missing>): Plot Phases

Statistics

interval_credible(): Bayesian Credible Interval

interval_hdr(): Bayesian HPD Regions

sensitivity(): Sensitivity

summary(<MCMC>) summary(<PhasesMCMC>): Marginal Summary Statistics for Multiple MCMC Chains

Tests

older(): Bayesian Test for Anteriority/Posteriority

Allen’s Interval Algebra

allen_analyze(): Analyze Composite Allen Relations

allen_complement(): Complement of an Allen Relation

allen_composition(): Composition of Allen Relations

allen_converse(): Converse of an Allen Relation

allen_illustrate(): Illustrate Basic and Composite Allen Relations

allen_intersect(): Intersection of Allen Relations

allen_joint_concurrency(): Joint Concurrence of Two or More Observed Intervals

allen_observe(): Observe the Relation Between two Phases

allen_observe_frequency(): Observed Frequency of an Allen Set

allen_relation(): Allen Relation Between Definite Intervals

allen_relation_code() allen_relation_string() allen_relation_concurrent() allen_relation_distinct(): The Basic Allen Relation Set

allen_union(): Union of Allen Relations

Tools

cbind2(<MCMC>,<MCMC>): Combine two MCMC Objects

as.data.frame(<CumulativeEvents>) as.data.frame(<ActivityEvents>) as.data.frame(<OccurrenceEvents>) as.data.frame(<TimeRange>): Coerce to a Data Frame

names(<MCMC>) `names<-`(<MCMC>) names(<PhasesMCMC>) `names<-`(<PhasesMCMC>): The Names of an Object

sort(<MCMC>) sort(<PhasesMCMC>): Sort an MCMC Object

sort.list(<MCMC>) sort.list(<PhasesMCMC>): Ordering Permutation of an MCMC Object

`[`(<MCMC>) `[`(<PhasesMCMC>): Extract or Replace Parts of an Object

Datasets

mcmc_events: Events

mcmc_phases: Phases